Warning
This documentation is for an old version of IPython. You can find docs for newer versions here.
IPython’s Direct interface¶
The direct, or multiengine, interface represents one possible way of working with a set of IPython engines. The basic idea behind the multiengine interface is that the capabilities of each engine are directly and explicitly exposed to the user. Thus, in the multiengine interface, each engine is given an id that is used to identify the engine and give it work to do. This interface is very intuitive and is designed with interactive usage in mind, and is the best place for new users of IPython to begin.
Starting the IPython controller and engines¶
To follow along with this tutorial, you will need to start the IPython controller and four IPython engines. The simplest way of doing this is to use the ipcluster command:
$ ipcluster start -n 4
For more detailed information about starting the controller and engines, see our introduction to using IPython for parallel computing.
Creating a DirectView
instance¶
The first step is to import the IPython IPython.parallel
module and then create a Client
instance:
In [1]: from IPython.parallel import Client
In [2]: rc = Client()
This form assumes that the default connection information (stored in
ipcontroller-client.json
found in IPYTHONDIR/profile_default/security
) is
accurate. If the controller was started on a remote machine, you must copy that connection
file to the client machine, or enter its contents as arguments to the Client constructor:
# If you have copied the json connector file from the controller:
In [2]: rc = Client('/path/to/ipcontroller-client.json')
# or to connect with a specific profile you have set up:
In [3]: rc = Client(profile='mpi')
To make sure there are engines connected to the controller, users can get a list of engine ids:
In [3]: rc.ids
Out[3]: [0, 1, 2, 3]
Here we see that there are four engines ready to do work for us.
For direct execution, we will make use of a DirectView
object, which can be
constructed via list-access to the client:
In [4]: dview = rc[:] # use all engines
See also
For more information, see the in-depth explanation of Views.
Quick and easy parallelism¶
In many cases, you simply want to apply a Python function to a sequence of
objects, but in parallel. The client interface provides a simple way
of accomplishing this: using the DirectView’s map()
method.
Parallel map¶
Python’s builtin map()
functions allows a function to be applied to a
sequence element-by-element. This type of code is typically trivial to
parallelize. In fact, since IPython’s interface is all about functions anyway,
you can just use the builtin map()
with a RemoteFunction
, or a
DirectView’s map()
method:
In [62]: serial_result = map(lambda x:x**10, range(32))
In [63]: parallel_result = dview.map_sync(lambda x: x**10, range(32))
In [67]: serial_result==parallel_result
Out[67]: True
Note
The DirectView
‘s version of map()
does
not do dynamic load balancing. For a load balanced version, use a
LoadBalancedView
.
See also
map()
is implemented via ParallelFunction
.
Remote function decorators¶
Remote functions are just like normal functions, but when they are called, they execute on one or more engines, rather than locally. IPython provides two decorators:
In [10]: @dview.remote(block=True)
....: def getpid():
....: import os
....: return os.getpid()
....:
In [11]: getpid()
Out[11]: [12345, 12346, 12347, 12348]
The @parallel
decorator creates parallel functions, that break up an element-wise
operations and distribute them, reconstructing the result.
In [12]: import numpy as np
In [13]: A = np.random.random((64,48))
In [14]: @dview.parallel(block=True)
....: def pmul(A,B):
....: return A*B
In [15]: C_local = A*A
In [16]: C_remote = pmul(A,A)
In [17]: (C_local == C_remote).all()
Out[17]: True
Calling a @parallel
function does not correspond to map. It is used for splitting
element-wise operations that operate on a sequence or array. For map
behavior,
parallel functions do have a map method.
call | pfunc(seq) | pfunc.map(seq) |
---|---|---|
# of tasks | # of engines (1 per engine) | # of engines (1 per engine) |
# of remote calls | # of engines (1 per engine) | len(seq) |
argument to remote | seq[i:j] (sub-sequence) |
seq[i] (single element) |
A quick example to illustrate the difference in arguments for the two modes:
In [16]: @dview.parallel(block=True)
....: def echo(x):
....: return str(x)
....:
In [17]: echo(range(5))
Out[17]: ['[0, 1]', '[2]', '[3]', '[4]']
In [18]: echo.map(range(5))
Out[18]: ['0', '1', '2', '3', '4']
See also
See the parallel()
and remote()
decorators for options.
Calling Python functions¶
The most basic type of operation that can be performed on the engines is to
execute Python code or call Python functions. Executing Python code can be
done in blocking or non-blocking mode (non-blocking is default) using the
View.execute()
method, and calling functions can be done via the
View.apply()
method.
apply¶
The main method for doing remote execution (in fact, all methods that
communicate with the engines are built on top of it), is View.apply()
.
We strive to provide the cleanest interface we can, so apply
has the following
signature:
view.apply(f, *args, **kwargs)
There are various ways to call functions with IPython, and these flags are set as
attributes of the View. The DirectView
has just two of these flags:
- dv.block : bool
- whether to wait for the result, or return an
AsyncResult
object immediately - dv.track : bool
- whether to instruct pyzmq to track when zeromq is done sending the message. This is primarily useful for non-copying sends of numpy arrays that you plan to edit in-place. You need to know when it becomes safe to edit the buffer without corrupting the message.
- dv.targets : int, list of ints
- which targets this view is associated with.
Creating a view is simple: index-access on a client creates a DirectView
.
In [4]: view = rc[1:3]
Out[4]: <DirectView [1, 2]>
In [5]: view.apply<tab>
view.apply view.apply_async view.apply_sync
For convenience, you can set block temporarily for a single call with the extra sync/async methods.
Blocking execution¶
In blocking mode, the DirectView
object (called dview
in
these examples) submits the command to the controller, which places the
command in the engines’ queues for execution. The apply()
call then
blocks until the engines are done executing the command:
In [2]: dview = rc[:] # A DirectView of all engines
In [3]: dview.block=True
In [4]: dview['a'] = 5
In [5]: dview['b'] = 10
In [6]: dview.apply(lambda x: a+b+x, 27)
Out[6]: [42, 42, 42, 42]
You can also select blocking execution on a call-by-call basis with the apply_sync()
method:
In [7]: dview.block=False
In [8]: dview.apply_sync(lambda x: a+b+x, 27)
Out[8]: [42, 42, 42, 42]
Python commands can be executed as strings on specific engines by using a View’s execute
method:
In [6]: rc[::2].execute('c=a+b')
In [7]: rc[1::2].execute('c=a-b')
In [8]: dview['c'] # shorthand for dview.pull('c', block=True)
Out[8]: [15, -5, 15, -5]
Non-blocking execution¶
In non-blocking mode, apply()
submits the command to be executed and
then returns a AsyncResult
object immediately. The
AsyncResult
object gives you a way of getting a result at a later
time through its get()
method.
See also
Docs on the AsyncResult object.
This allows you to quickly submit long running commands without blocking your local Python/IPython session:
# define our function
In [6]: def wait(t):
....: import time
....: tic = time.time()
....: time.sleep(t)
....: return time.time()-tic
# In non-blocking mode
In [7]: ar = dview.apply_async(wait, 2)
# Now block for the result
In [8]: ar.get()
Out[8]: [2.0006198883056641, 1.9997570514678955, 1.9996809959411621, 2.0003249645233154]
# Again in non-blocking mode
In [9]: ar = dview.apply_async(wait, 10)
# Poll to see if the result is ready
In [10]: ar.ready()
Out[10]: False
# ask for the result, but wait a maximum of 1 second:
In [45]: ar.get(1)
---------------------------------------------------------------------------
TimeoutError Traceback (most recent call last)
/home/you/<ipython-input-45-7cd858bbb8e0> in <module>()
----> 1 ar.get(1)
/path/to/site-packages/IPython/parallel/asyncresult.pyc in get(self, timeout)
62 raise self._exception
63 else:
---> 64 raise error.TimeoutError("Result not ready.")
65
66 def ready(self):
TimeoutError: Result not ready.
Note
Note the import inside the function. This is a common model, to ensure
that the appropriate modules are imported where the task is run. You can
also manually import modules into the engine(s) namespace(s) via
view.execute('import numpy')
.
Often, it is desirable to wait until a set of AsyncResult
objects
are done. For this, there is a the method wait()
. This method takes a
tuple of AsyncResult
objects (or msg_ids
or indices to the client’s History),
and blocks until all of the associated results are ready:
In [72]: dview.block=False
# A trivial list of AsyncResults objects
In [73]: pr_list = [dview.apply_async(wait, 3) for i in range(10)]
# Wait until all of them are done
In [74]: dview.wait(pr_list)
# Then, their results are ready using get() or the `.r` attribute
In [75]: pr_list[0].get()
Out[75]: [2.9982571601867676, 2.9982588291168213, 2.9987530708312988, 2.9990990161895752]
The block
and targets
keyword arguments and attributes¶
Most DirectView methods (excluding apply()
) accept block
and
targets
as keyword arguments. As we have seen above, these keyword arguments control the
blocking mode and which engines the command is applied to. The View
class also has
block
and targets
attributes that control the default behavior when the keyword
arguments are not provided. Thus the following logic is used for block
and targets
:
- If no keyword argument is provided, the instance attributes are used.
- The Keyword arguments, if provided overrides the instance attributes for the duration of a single call.
The following examples demonstrate how to use the instance attributes:
In [16]: dview.targets = [0,2]
In [17]: dview.block = False
In [18]: ar = dview.apply(lambda : 10)
In [19]: ar.get()
Out[19]: [10, 10]
In [20]: dview.targets = rc.ids # all engines (4)
In [21]: dview.block = True
In [22]: dview.apply(lambda : 42)
Out[22]: [42, 42, 42, 42]
The block
and targets
instance attributes of the
DirectView
also determine the behavior of the parallel magic commands.
See also
See the documentation of the Parallel Magics.
Moving Python objects around¶
In addition to calling functions and executing code on engines, you can
transfer Python objects to and from your IPython session and the engines. In
IPython, these operations are called push()
(sending an object to the
engines) and pull()
(getting an object from the engines).
Basic push and pull¶
Here are some examples of how you use push()
and pull()
:
In [38]: dview.push(dict(a=1.03234,b=3453))
Out[38]: [None,None,None,None]
In [39]: dview.pull('a')
Out[39]: [ 1.03234, 1.03234, 1.03234, 1.03234]
In [40]: dview.pull('b', targets=0)
Out[40]: 3453
In [41]: dview.pull(('a','b'))
Out[41]: [ [1.03234, 3453], [1.03234, 3453], [1.03234, 3453], [1.03234, 3453] ]
In [42]: dview.push(dict(c='speed'))
Out[42]: [None,None,None,None]
In non-blocking mode push()
and pull()
also return
AsyncResult
objects:
In [48]: ar = dview.pull('a', block=False)
In [49]: ar.get()
Out[49]: [1.03234, 1.03234, 1.03234, 1.03234]
Dictionary interface¶
Since a Python namespace is just a dict
, DirectView
objects provide
dictionary-style access by key and methods such as get()
and
update()
for convenience. This make the remote namespaces of the engines
appear as a local dictionary. Underneath, these methods call apply()
:
In [51]: dview['a']=['foo','bar']
In [52]: dview['a']
Out[52]: [ ['foo', 'bar'], ['foo', 'bar'], ['foo', 'bar'], ['foo', 'bar'] ]
Scatter and gather¶
Sometimes it is useful to partition a sequence and push the partitions to
different engines. In MPI language, this is know as scatter/gather and we
follow that terminology. However, it is important to remember that in
IPython’s Client
class, scatter()
is from the
interactive IPython session to the engines and gather()
is from the
engines back to the interactive IPython session. For scatter/gather operations
between engines, MPI, pyzmq, or some other direct interconnect should be used.
In [58]: dview.scatter('a',range(16))
Out[58]: [None,None,None,None]
In [59]: dview['a']
Out[59]: [ [0, 1, 2, 3], [4, 5, 6, 7], [8, 9, 10, 11], [12, 13, 14, 15] ]
In [60]: dview.gather('a')
Out[60]: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]
Other things to look at¶
How to do parallel list comprehensions¶
In many cases list comprehensions are nicer than using the map function. While
we don’t have fully parallel list comprehensions, it is simple to get the
basic effect using scatter()
and gather()
:
In [66]: dview.scatter('x',range(64))
In [67]: %px y = [i**10 for i in x]
Parallel execution on engines: [0, 1, 2, 3]
In [68]: y = dview.gather('y')
In [69]: print y
[0, 1, 1024, 59049, 1048576, 9765625, 60466176, 282475249, 1073741824,...]
Remote imports¶
Sometimes you will want to import packages both in your interactive session
and on your remote engines. This can be done with the ContextManager
created by a DirectView’s sync_imports()
method:
In [69]: with dview.sync_imports():
....: import numpy
importing numpy on engine(s)
Any imports made inside the block will also be performed on the view’s engines.
sync_imports also takes a local
boolean flag that defaults to True, which specifies
whether the local imports should also be performed. However, support for local=False
has not been implemented, so only packages that can be imported locally will work
this way. Note that the usual renaming of the import handle in the same line like in
import matplotlib.pyplot as plt' does not work on the remote engine, the `as plt
is
ignored remotely, while it executes locally. One could rename the remote handle with
%px plt = pyplot
though after the import.
You can also specify imports via the @require
decorator. This is a decorator
designed for use in Dependencies, but can be used to handle remote imports as well.
Modules or module names passed to @require
will be imported before the decorated
function is called. If they cannot be imported, the decorated function will never
execute and will fail with an UnmetDependencyError. Failures of single Engines will
be collected and raise a CompositeError, as demonstrated in the next section.
In [69]: from IPython.parallel import require
In [70]: @require('re')
....: def findall(pat, x):
....: # re is guaranteed to be available
....: return re.findall(pat, x)
# you can also pass modules themselves, that you already have locally:
In [71]: @require(time)
....: def wait(t):
....: time.sleep(t)
....: return t
Note
sync_imports()
does not allow import foo as bar
syntax,
because the assignment represented by the as bar
part is not
available to the import hook.
Parallel exceptions¶
In the multiengine interface, parallel commands can raise Python exceptions,
just like serial commands. But it is a little subtle, because a single
parallel command can actually raise multiple exceptions (one for each engine
the command was run on). To express this idea, we have a
CompositeError
exception class that will be raised in most cases. The
CompositeError
class is a special type of exception that wraps one or
more other types of exceptions. Here is how it works:
In [78]: dview.block = True
In [79]: dview.execute("1/0")
[0:execute]:
---------------------------------------------------------------------------
ZeroDivisionError Traceback (most recent call last)
----> 1 1/0
ZeroDivisionError: integer division or modulo by zero
[1:execute]:
---------------------------------------------------------------------------
ZeroDivisionError Traceback (most recent call last)
----> 1 1/0
ZeroDivisionError: integer division or modulo by zero
[2:execute]:
---------------------------------------------------------------------------
ZeroDivisionError Traceback (most recent call last)
----> 1 1/0
ZeroDivisionError: integer division or modulo by zero
[3:execute]:
---------------------------------------------------------------------------
ZeroDivisionError Traceback (most recent call last)
----> 1 1/0
ZeroDivisionError: integer division or modulo by zero
Notice how the error message printed when CompositeError
is raised has
information about the individual exceptions that were raised on each engine.
If you want, you can even raise one of these original exceptions:
In [79]: from IPython.parallel import CompositeError
In [80]: try:
....: dview.execute('1/0', block=True)
....: except CompositeError, e:
....: e.raise_exception()
....:
....:
---------------------------------------------------------------------------
ZeroDivisionError Traceback (most recent call last)
----> 1 1/0
ZeroDivisionError: integer division or modulo by zero
If you are working in IPython, you can simple type %debug
after one of
these CompositeError
exceptions is raised, and inspect the exception
instance:
In [81]: dview.execute('1/0')
[0:execute]:
---------------------------------------------------------------------------
ZeroDivisionError Traceback (most recent call last)
----> 1 1/0
ZeroDivisionError: integer division or modulo by zero
[1:execute]:
---------------------------------------------------------------------------
ZeroDivisionError Traceback (most recent call last)
----> 1 1/0
ZeroDivisionError: integer division or modulo by zero
[2:execute]:
---------------------------------------------------------------------------
ZeroDivisionError Traceback (most recent call last)
----> 1 1/0
ZeroDivisionError: integer division or modulo by zero
[3:execute]:
---------------------------------------------------------------------------
ZeroDivisionError Traceback (most recent call last)
----> 1 1/0
ZeroDivisionError: integer division or modulo by zero
In [82]: %debug
> /.../site-packages/IPython/parallel/client/asyncresult.py(125)get()
124 else:
--> 125 raise self._exception
126 else:
# Here, self._exception is the CompositeError instance:
ipdb> e = self._exception
ipdb> e
CompositeError(4)
# we can tab-complete on e to see available methods:
ipdb> e.<TAB>
e.args e.message e.traceback
e.elist e.msg
e.ename e.print_traceback
e.engine_info e.raise_exception
e.evalue e.render_traceback
# We can then display the individual tracebacks, if we want:
ipdb> e.print_traceback(1)
[1:execute]:
---------------------------------------------------------------------------
ZeroDivisionError Traceback (most recent call last)
----> 1 1/0
ZeroDivisionError: integer division or modulo by zero
Since you might have 100 engines, you probably don’t want to see 100 tracebacks
for a simple NameError because of a typo.
For this reason, CompositeError truncates the list of exceptions it will print
to CompositeError.tb_limit
(default is five).
You can change this limit to suit your needs with:
In [20]: from IPython.parallel import CompositeError
In [21]: CompositeError.tb_limit = 1
In [22]: %px x=z
[0:execute]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)
----> 1 x=z
NameError: name 'z' is not defined
... 3 more exceptions ...
All of this same error handling magic even works in non-blocking mode:
In [83]: dview.block=False
In [84]: ar = dview.execute('1/0')
In [85]: ar.get()
[0:execute]:
---------------------------------------------------------------------------
ZeroDivisionError Traceback (most recent call last)
----> 1 1/0
ZeroDivisionError: integer division or modulo by zero
... 3 more exceptions ...